Package: flippant 1.5.7
flippant: Dithionite Scramblase Assay Analysis
The lipid scrambling activity of protein extracts and purified scramblases is often determined using a fluorescence-based assay involving many manual steps. flippant offers an integrated solution for the analysis and publication-grade graphical presentation of dithionite scramblase assays, as well as a platform for review, dissemination and extension of the strategies it employs. The package's name derives from a play on the fact that lipid scrambling is also sometimes referred to as 'flipping'. The package is originally published as Cotton, R.J., Ploier, B., Goren, M.A., Menon, A.K., and Graumann, J. (2017). "flippant–An R package for the automated analysis of fluorescence-based scramblase assays." BMC Bioinformatics 18, 146. <doi:10.1186/s12859-017-1542-y>.
Authors:
flippant_1.5.7.tar.gz
flippant_1.5.7.zip(r-4.7-any)flippant_1.5.7.zip(r-4.6-any)flippant_1.5.7.zip(r-4.5-any)
flippant_1.5.7.tgz(r-4.6-any)flippant_1.5.7.tgz(r-4.5-any)
flippant_1.5.7.tar.gz(r-4.7-any)flippant_1.5.7.tar.gz(r-4.6-any)
flippant_1.5.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
flippant/json (API)
| # Install 'flippant' in R: |
| install.packages('flippant', repos = c('https://r-cheologist.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/r-cheologist/flippant/issues
Last updated from:26848bd268. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 142 | ||
| source / vignettes | OK | 262 | ||
| linux-release | OK | 129 | ||
| macos-release | OK | 181 | ||
| macos-oldrel | OK | 180 | ||
| windows-devel | OK | 87 | ||
| windows-release | OK | 89 | ||
| windows-oldrel | OK | 80 | ||
| wasm-release | OK | 105 |
Exports:extract_case_study_dataparse_fluorimeter_outputscramblase_assay_input_templatescramblase_assay_plotscramblase_assay_statsscramblase_assay_traces
Dependencies:clicpp11data.tablefarverggplot2gluegtableisobandlabelinglifecyclemagrittrminpack.lmplyrpracmaR6RColorBrewerRcpprlangS7scalesstringivctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Extract the case study dataset | extract_case_study_data |
| flippant | flippant-package flippant |
| parse_felix_32_output | parse_felix_32_output |
| parse_felix_gx_output | parse_felix_gx_output |
| parse_fluorimeter_output | parse_fluorimeter_output |
| parse_FluorS_Essence_3.8_output | parse_FluorS_Essence_3.8_output |
| parse_manual_output | parse_manual_output |
| scramblase_assay_plot | scramblase_assay_calculations scramblase_assay_input_template scramblase_assay_plot scramblase_assay_stats scramblase_assay_traces |